miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|163516571|gb|FC761311.1|FC761311 TATAGAGATAAAGTAGAAATGATCAATACTAAAAAGCAGGAAGTTGAAGATAACTGGGAGAGACTGGAAGATCTTTCTGA
TCAAAGAAAAGCCAAATTATCAGATTCCTACCAGTTACAGAAATTCTTATCAGATGGCAGAGAATTGGTGTCTTGGTCTA
ATGAAATGATAGCCAGAATGAATGCTGGTGAACTAGCTAAAGACGTAGCAGAAGCTGAAAACTTTTTACAGATGCATCAT
GAGAGGAAGGCTGAAATAGATGGTAGAAAAACTCATTTCTCTACGATACGAGAACATGGTATGAACCTAGTAAATAATAA
ACATTACGCTAGTGATGATATACAGAAGATGATATCACAGTTAGATAAAACTAAGTTATCTCTCAACGGTACTTGGGATA
AACGTAACTATCTACTTACACAATGTCATGACTTACAGGTATTTAAAGAGACAGCTGAACAATGTGATACATGGCTAGGA
ACTAAAGAAGCTTTCTTTAGCT




Most similar to sp|P13395|SPTCA_DROME

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P13395|SPTCA_DROME Spectrin alpha chain OS=Drosophila
           melanogaster GN=alpha-Spec PE=1 SV=2
          Length = 2415

 Score =  144 bits (363), Expect = 3e-34
 Identities = 72/167 (43%), Positives = 101/167 (60%)
 Frame = +1

Query: 1   YRDKVEMINTKKQEVEDNWERLEDLSDQRKAKLSDSYQLQKFLSDGRELVSWSNEMIARM 180
           + D  + I  K+ E+ + W+ L   + +RK KL +SY L +FL+D R+LVSW N M A +
Sbjct: 328 HADHSDQIRDKQAEIANYWQSLTTKARERKQKLDESYYLHRFLADFRDLVSWINGMKAII 387

Query: 181 NAGELAKDVAEAENFLQMHHERKAEIDGRKTHFSTIREHGMNLVNNKHYASDDIQKMISQ 360
           +A ELAKDVA AE  L+ H E K EID R+  F    E G  L+  +HYA+ +IQ+ ++ 
Sbjct: 388 SADELAKDVAGAEALLERHQEHKGEIDAREDSFKLTTESGQKLLEREHYAAAEIQEKLAA 447

Query: 361 LDKTKLSLNGTWDKRNYLLTQCHDLQVFKETAEQCDTWLGTKEAFFS 501
           L+  K SL   W+ R  L  QC DLQ+F    EQ DTW+  +EAF +
Sbjct: 448 LENDKSSLLSLWEDRRILYEQCMDLQLFYRDTEQADTWMAKQEAFLA 494



 Score =  125 bits (314), Expect = 1e-28
 Identities = 61/165 (36%), Positives = 93/165 (56%)
 Frame = +1

Query: 7    DKVEMINTKKQEVEDNWERLEDLSDQRKAKLSDSYQLQKFLSDGRELVSWSNEMIARMNA 186
            D  E    K++E+ + W+++   S  RK KL DSY LQ+FLSD R+L++W N M++ + +
Sbjct: 1253 DTAEQTYAKQKEINEMWDQIITKSTARKEKLLDSYDLQRFLSDYRDLLAWINSMMSLVTS 1312

Query: 187  GELAKDVAEAENFLQMHHERKAEIDGRKTHFSTIREHGMNLVNNKHYASDDIQKMISQLD 366
             ELA DV  AE  ++ H E + EID R   F    + G  L+   HYAS +I++ I  L 
Sbjct: 1313 DELANDVTGAEALIERHQEHRTEIDARAGTFGAFEQFGNELLQANHYASPEIKEKIEDLA 1372

Query: 367  KTKLSLNGTWDKRNYLLTQCHDLQVFKETAEQCDTWLGTKEAFFS 501
            K +  L   W +R   L Q  DLQ++    E  ++W+  +EAF +
Sbjct: 1373 KAREDLEKAWTERRLQLEQNLDLQLYMRDCELAESWMSAREAFLN 1417